nf-core/configs: self_hosted_runner
Profile for nf-cores self-hosted runners provided by nf-core/configs.
self-hosted-runner Configuration
To use, run the pipeline with -profile self-hosted-runner. This will download and launch the self-hosted-runner.config which has been pre-configured with a setup suitable for the self-hosted-runners (for now on AWS via terraform). The main aim of this profile is to fix the permission errors on self-hosted GitHub actions runners.
Config file
// Config file for nf-core's self-hosted-runners
//Profile config names for nf-core/configs
params {
config_profile_description = "Profile for nf-core's self-hosted runners provided by nf-core/configs."
config_profile_contact = 'Matthias Hörtenhuber (@mashehu)'
config_profile_url = 'https://github.com/nf-core/actions-runners'
// General cpus/memory/time requirements
// WARNING: This will be deprecated from the pipeline template in favour of resourceLimits
// Keeping the parameters for backwards compatibility
max_cpus = 2
max_memory = 7.GB
max_time = 72.h
}
process {
resourceLimits = [
memory: 7.GB,
cpus: 2,
time: 72.h
]
resourceLimits = [
cpus: 2,
memory: '7.GB',
time: '72.h'
]
}
docker {
enabled = true
fixOwnership = true
runOptions = '--platform=linux/amd64'
}
contact
